June 25, Wednesday
Bret Larget:
Markov chain Monte Carlo algorithms for the
Bayesian analysis of phylogenetic trees
[pdf]
Gerton Lunter:
A nucleotide substitution model with
nearest-neighbour interactions
Alexei Drummond:
Relaxing the molecular clock for
phylogenetic inference
[pdf]
Istvan Miklos:
Gain, loss, duplication model
[pdf]
Georgia
Tsagkogeorga:
Updating
tunicate phylogeny: Bayesian analysis of 18S rRNA sequences
Bastien Boussau:
Parallel
adaptations to high temperatures in the Archean Eon
[pdf]
Software
demos:
Alexei
Drummond: BEAST
Gerton
Lunter: HMMoC [ppt][pdf]
Ian Holmes:
DART [Keynote][pdf][QuickTime]
June 26, Thursday
Alexei Drummond:
Non-parametric modeling of population
history using the coalescent
[pdf]
Marc Suchard:
Fast, accurate and simulation-free
stochastic mapping: effective tests for evolutionary innovation
Gerton Lunter:
Probabilistic whole-genome alignments
reveal high indel rates in the human and mouse genomes
Jeff Thorne:
Adding Phenotype and Population Genetics to
Interspecific Evolution
[pdf]
Ian Holmes:
XRate: a fast prototyping, training and
annotation tool for phylo-grammars
Vladimir N.
Minin:
Bayesian
phylogenetic mapping of recombi–nation hot-spots
[pdf]
Yosef E.
Maruvka:
New methods
for inferring ancient migration rates, using genetics variation, applied to
prehistoric human migration
Discussion
State of
the art of modelling the molecular evolution [ppt]
[pdf]
June 27, Friday
Ian Holmes:
Transducers: an emerging probabilistic
framework for modeling indels on trees
Rahul Satija:
Statistical alignment and rate
heterogeneity
[pdf]
Istvan Miklos:
Protein structure prediction with
statistical alignment
Rune Lyngsoe:
Statistical alignment with spannoids
[pdf]
Ian Holmes:
Discovery, alignment and reconstruction of
structured RNA
Elena
Rivas:
Probabilistic
phylo-genetic inference with insertions and deletions
[pdf]
Alexander
V. Alekseyenko:
Wagner and
Dollo: a stochastic duet by composing two parsimonious solos
[pdf]
Bengt
Autzen:
The
Ôstar-tree paradoxÕ in Bayesian phylogeny
June 28, Saturday
Bhalchandra Thatte:
Convergence of the TKF91 model
[pdf]
Istvan Miklos:
Speed of convergence of MCMC methods
Dirk Metzler:
Galton-Wattson process and statistical
alignment
[pdf]
Mike Steeel:
Some mathematical aspects of Bayesian
phylogenetics
[pdf]
Marc Suchard:
Temporal-spatial smoothing in phylogenetics
June 29, Sunday
Jens Lagergren:
Bayesian Gene/Species Tree Reconciliation
and Orthology Analysis Using MCMC
Miklos Csuros:
Intron evolution
[pdf]
Ben
Redelings:
Modelling
indel hotspots when inferring alignments
[pdf]
Bret Larget:
Bayesian analysis of metazoan mitochondrial
genome arrangements
[pdf]
Dirk Metzler:
MCMC RNA structure prediction
[pdf]
Discussion
Session:
Jotun Hein:
WhatÕs next? [pdf]